FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001147198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001147198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29290011
Sequences flagged as poor quality0
Sequence length75
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA1733410.5918092690371471TruSeq Adapter, Index 7 (100% over 63bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAG341590.11662337716431721TruSeq Adapter, Index 7 (100% over 63bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)