FastQCFastQC Report
Tue 27 Sep 2022
EGAF00001159141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001159141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38419924
Sequences flagged as poor quality0
Sequence length42
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGTGGATC16989384.422023323107042TruSeq Adapter, Index 7 (97% over 36bp)
TATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGTGGATC424420.11046872450866899TruSeq Adapter, Index 9 (97% over 35bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)