FastQCFastQC Report
Wed 6 Sep 2023
EGAF00001164699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001164699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68867928
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATGT985510.14310144484091347No Hit
GTGGGCTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTGATGAGTT923360.13407692474790298No Hit
CTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTGG872620.12670919909191983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)