FastQCFastQC Report
Tue 8 Aug 2023
EGAF00001164700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001164700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68867928
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTAT914920.132851390563108No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGC733410.1064951453164091No Hit
CGCAAAACTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCTC699740.10160607706972105No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCC697900.10133889900099796No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)