FastQCFastQC Report
Mon 4 Sep 2023
EGAF00001165553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001165553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66387360
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAGGCAGCACTCTCGGGACGTCTCCACCATGGCCTGGGCTCTGCTCCT1289590.19425233960199653No Hit
CCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAA1194130.17987309632436055No Hit
CATGGACCTCCTGCACAAGAACATGAAACACCTGTGGTTCTTCCTCCTCCT1112410.16756352414074005No Hit
CTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGG1031950.15544374712294629No Hit
TGGACCTCCTGCACAAGAACATGAAACACCTGTGGTTCTTCCTCCTCCTGG920720.13868905165079617No Hit
GGAGGCAGCACTCTCGGGACGTCTCCACCATGGCCTGGGCTCTGCTCCTCC869290.13094209500121712No Hit
CGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGT782410.11785526642421089No Hit
CTCGGGACGTCTCCACCATGGCCTGGGCTCTGCTCCTCCTCAGCCTCCTCA695180.10471571696780833No Hit
CTCTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCTGCTCATATGC678530.10220770941938345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)