FastQCFastQC Report
Fri 24 Mar 2023
EGAF00001166217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001166217
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96071869
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACG3719830.3871924257037198No Hit
CTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTA2954550.30753539311283723No Hit
TGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTAC2067080.21515975711891272No Hit
CAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCA989980.10304577295149739No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)