FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001166884

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001166884
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55001846
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTT2432640.442283337181083No Hit
CGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAG1444670.2626584569543357No Hit
GTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAA718140.13056652680348219No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)