FastQCFastQC Report
Wed 15 Mar 2023
EGAF00001166983

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001166983
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99962652
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGT4038120.4039628720534545No Hit
CGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCATGGT2817000.2818052486242562No Hit
TTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCATG1410170.14106968670659117No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAATG1218310.12187651844210776No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)