FastQCFastQC Report
Fri 10 Feb 2023
EGAF00001167266

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001167266
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences198670825
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGT6055620.304806707275716No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3993890.2010305237319068No Hit
GCCGCGACGAGTAGGAGGGCCGCTGCGGTGAGCCTTGAAGCCTAGGGCGCG2330090.11728395450112013No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)