FastQCFastQC Report
Sun 12 May 2024
EGAF00001167811

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001167811
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54771866
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGG3494160.6379479567119367No Hit
CGGGCTTCTTACCCATTTAAAGTTTGAGAATAGGTTGAGATCGTTTCGGC681710.12446353388800009No Hit
CGAATGGTTTAGCGCCAGGTTCCCCACGAACGTGCGGTGCGTGACGGGCG637120.11632249301128429No Hit
CTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCG576910.1053296230586703No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)