FastQCFastQC Report
Thu 14 Sep 2023
EGAF00001167814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001167814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64424191
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCC823330.12779826757933213No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCTCGGGTCTTCCCGGAG809660.1256763938254188No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC739590.11480004459815413No Hit
CCAAAATGAACGAAAATCTGTTCGCTTCATTCATTGCCCCCACAATCCTAG732980.11377403249037306No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCTC697150.1082124570256536No Hit
CCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCGT688030.10679683971506913No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)