FastQCFastQC Report
Mon 13 May 2024
EGAF00001167943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001167943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88200684
Total Bases4.4 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC2126450.24109223461350934Illumina Single End PCR Primer 1 (100% over 50bp)
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT1027890.11653991254761698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)