FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001170637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001170637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8605808
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTGATATATCTCGTAT235790.2739893801953286TruSeq Adapter, Index 25 (97% over 44bp)
CAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTC88490.10282590548150738No Hit
GTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCCTGAGGA87130.10124557740539877No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)