FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001187082

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001187082
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52527389
Sequences flagged as poor quality0
Sequence length42
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATC2152450.4097766976386357TruSeq Adapter, Index 7 (100% over 42bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCAT539430.10269499593821427TruSeq Adapter, Index 7 (100% over 41bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)