FastQCFastQC Report
Wed 27 Sep 2023
EGAF00001209084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001209084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38879135
Sequences flagged as poor quality0
Sequence length101
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCC670570.17247554504491935No Hit
AGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCC632260.16262193076054804No Hit
CAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGA621810.1599341137605042No Hit
CACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGCA609550.15678075142361061No Hit
CTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTGGGGGGCTGCCTG597660.15372255581303443No Hit
ATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTG589220.1515517256235253No Hit
GAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATG587420.15108875236035987No Hit
CCCAGCTCCACCTGCCCCACCTGCAGGTCCTCTGCCTCCCGGCGGGTCTT578120.14869672383400503No Hit
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC570110.1466364928129188No Hit
CCGCACACTAGGTAGAGAGCTTCCACCAGGTGTGAGCCGCACAGGTGTTG567700.14601662305501395No Hit
CTGCAGGCTGCCTGCACCAGGGCCCCCGCCCAGCTCCACCTGCCCCACCT528750.1359983960548505No Hit
CACAGGTGTTGGTTCACAAAGGCTGCGGCTGGGTCAGGTCCCCAGAGGGC521030.13401275517060757No Hit
CTCGTTCCCCGCACACTAGGTAGAGAGCTTCCACCAGGTGTGAGCCGCAC493930.12704243548628333No Hit
TGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGACCT487310.12533972270730817No Hit
CTCACACCTGGTGGAAGCTCTCTACCTAGTGTGCGGGGAACGAGGCTTCT469820.12084116583355056No Hit
CGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGCACC465320.11968373267563695No Hit
CGCAGCCTTTGTGAACCAACACCTGTGCGGCTCACACCTGGTGGAAGCTC433380.11146852932813447No Hit
AGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGAT425760.10950860918073409No Hit
GGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGACCTGAC420730.10821485611755509No Hit
CTTCTACACACCCAAGACCCGCCGGGAGGCAGAGGACCTGCAGGTGGGGC417910.10748953133859589No Hit
CGGGTCTTGGGTGTGTAGAAGAAGCCTCGTTCCCCGCACACTAGGTAGAG413920.10646327393857913No Hit
AAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCC411950.1059565754227814No Hit
GGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCT404340.10399922734906525No Hit
CCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGACCTGACCCAGCCGCAG396050.10186697826481993No Hit
CGCACACTAGGTAGAGAGCTTCCACCAGGTGTGAGCCGCACAGGTGTTGG390480.10043433322269131No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)