FastQCFastQC Report
Tue 19 Sep 2023
EGAF00001209085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001209085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38879135
Sequences flagged as poor quality0
Sequence length101
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCC618400.1590570366341741No Hit
CTGCAGGCTGCCTGCACCAGGGCCCCCGCCCAGCTCCACCTGCCCCACCT578030.14867357517084678No Hit
CACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGCA571330.1469502858023976No Hit
CCCAGCTCCACCTGCCCCACCTGCAGGTCCTCTGCCTCCCGGCGGGTCTT559320.14386122530761036No Hit
CAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGA555370.14284525620233063No Hit
CCGCACACTAGGTAGAGAGCTTCCACCAGGTGTGAGCCGCACAGGTGTTG546640.1405998358759782No Hit
AGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCC540320.13897428530753064No Hit
GAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATG519690.13366809729691775No Hit
CTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTGGGGGGCTGCCTG519170.1335343494653366No Hit
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC506560.13029096454949424No Hit
ATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTG500180.12864998153894114No Hit
CTCGTTCCCCGCACACTAGGTAGAGAGCTTCCACCAGGTGTGAGCCGCAC481410.1238221992335992No Hit
CACAGGTGTTGGTTCACAAAGGCTGCGGCTGGGTCAGGTCCCCAGAGGGC478630.12310716274937701No Hit
CCCAGCTCCACCTGCCCCACCTGCAGGTCCTCTGCCTCCCGGCGGGGCTT438920.11289345814921037No Hit
CGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGCACC435120.11191607014919443No Hit
CTCACACCTGGTGGAAGCTCTCTACCTAGTGTGCGGGGAACGAGGCTTCT427750.11002045184390033No Hit
TGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGACCT412930.10620863864383813No Hit
CTTCTACACACCCAAGACCCGCCGGGAGGCAGAGGACCTGCAGGTGGGGC404280.10398379490695972No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)