FastQCFastQC Report
Wed 14 Sep 2022
EGAF00001209938

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001209938
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences18597871
Sequences flagged as poor quality0
Sequence length90
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCACTCATCGACCT250800.13485414540191187No Hit
GGGCGATTGATGAAAAGGCGGTTGAGGCGTCTGGTGAGTAGTGCATGGCT224970.12096545889580587No Hit
GGTGTGTGGTGGCCTTGGTATGTGCTTTCTCGTGTTACATCGCGCCATCA190560.10246334109963447No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)