FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001211438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001211438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3765922
Sequences flagged as poor quality0
Sequence length35-151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTAT243240.6458976048893206TruSeq Adapter, Index 27 (97% over 39bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTATG160360.4258186972539527TruSeq Adapter, Index 27 (97% over 38bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGAACTCGTATG66280.1759993966948864TruSeq Adapter, Index 27 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)