FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001211482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001211482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3814861
Sequences flagged as poor quality0
Sequence length35-151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTAT363740.9534816602754335TruSeq Adapter, Index 7 (97% over 35bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG166150.4355335620354188TruSeq Adapter, Index 7 (97% over 34bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTAACTCGTATG38440.10076382861656036TruSeq Adapter, Index 7 (97% over 34bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)