FastQCFastQC Report
Tue 27 Sep 2022
EGAF00001211525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001211525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16258232
Sequences flagged as poor quality0
Sequence length35-151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTAT1423770.875722526286991TruSeq Adapter, Index 6 (97% over 36bp)
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG993650.6111673151176585No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG556990.34258952633964135No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)