FastQCFastQC Report
Fri 13 Jan 2023
EGAF00001211536

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001211536
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411040186
Sequences flagged as poor quality0
Sequence length35-115
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGC6100420.1484141990924459TruSeq Adapter, Index 8 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5496450.13372050196571292No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)