FastQCFastQC Report
Wed 14 Sep 2022
EGAF00001215474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001215474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107503698
Sequences flagged as poor quality0
Sequence length100-101
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAGACCTGGGACAGAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCC5828850.5421999529727806No Hit
CTGGGACAGAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCCTAGCTAG2295040.21348474914788512No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2064350.19202595244677073No Hit
GAAGACCTGGGACAGAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCCT1793580.1668389119042212No Hit
GGCTCCTCGGCTTTGACAGAGTGCAAGACGATGACTTGCAAAATGTCGCA1758600.16358507034799863No Hit
CTCGGCTTTGACAGAGTGCAAGACGATGACTTGCAAAATGTCGCAGCTGG1723960.16036285561079025No Hit
CCTGGGACAGAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCCTAGCTA1591970.14808513842937757No Hit
CTGCTGTCTGCCCTCTCTGGTCACCCTGCCTAGCTAGAGGATCTGTGACC1322580.1230264655640032No Hit
GAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCCTAGCTAGAGGATCTG1291540.12013912302812131No Hit
GGCAAGTCCGTGGGCATCATGTTGACCGAGCTGGAGAAAGCCTTGAACTC1080310.10049049661528851No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)