FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001215494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001215494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61949905
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGGCCCCTAACAGGGGCC1620360.26155972313436154No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC868800.1402423458115069No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT824000.13301069630373122No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC772170.12464425893792734No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA683290.11029718286089381No Hit
GTAAAACCCAGCCCATGGCCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT644000.10395496167427537No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA625020.10089119587834718No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGGCCCCTAACAGGGGCCCT622250.10044406040654946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)