FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001215504

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001215504
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55710427
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGACAGAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCCTAGCTAG1882060.33782903871837133No Hit
AGAAGACCTGGGACAGAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCC1630390.2926543715057147No Hit
CCTGGGACAGAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCCTAGCTA914360.1641272647219164No Hit
CTGCTGTCTGCCCTCTCTGGTCACCCTGCCTAGCTAGAGGATCTGTGACC765640.1374320825076426No Hit
CTCGGCTTTGACAGAGTGCAAGACGATGACTTGCAAAATGTCGCAGCTGG709060.12727599449201854No Hit
CTTGGCTCCAAAGCATCCAGGCTCAAGGAAAAACATGGCCTGCTATTGCA675590.12126814249691534No Hit
GAAGACCTGGGACAGAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCCT636600.11426945264662934No Hit
GGACAGAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCCTAGCTAGAGG636100.11417970284090624No Hit
CAGAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCCTAGCTAGAGGATC625500.11227700695957687No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)