FastQCFastQC Report
Sun 5 May 2024
EGAF00001216922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001216922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50106392
Total Bases3.7 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN511050.10199297526750678No Hit
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN510120.10180737020538218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)