FastQCFastQC Report
Fri 10 May 2024
EGAF00001216930

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001216930
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49945217
Total Bases3.7 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN551290.11037893778697568No Hit
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN528880.10589202165244371No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)