FastQCFastQC Report
Fri 3 May 2024
EGAF00001216931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001216931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53329146
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAAAGTGGTTTGGTTTAGACGTCCGGGAATTGCATCTGTTTTTAAGCC701810.13159970722201325No Hit
GAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATTTTGG613530.11504590754181589No Hit
ACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTC536890.10067477922860418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)