FastQCFastQC Report
Thu 2 May 2024
EGAF00001216933

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001216933
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51492252
Total Bases3.8 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAAAGTGGTTTGGTTTAGACGTCCGGGAATTGCATCTGTTTTTAAGCC685890.1332025641449902No Hit
GAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATTTTGG586970.11399190697660688No Hit
ACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTC520090.10100354515471571No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)