FastQCFastQC Report
Thu 9 May 2024
EGAF00001217073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001217073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34888529
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCCGCGATCTCGTA1619250.464121029579665Illumina Paired End Sequencing Primer 2 (100% over 36bp)
CTTTCCAGAATGGCGCAAATTCGGCATGTCCGGGGTCACAGTTTTTAAGT381140.10924507593885657No Hit
GACCCCGAAAATAATTTTTAACCATTTTCAAAAAAAAGTTTTTTTTTTTT351400.10072078418668783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)