FastQCFastQC Report
Thu 9 May 2024
EGAF00001217075

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001217075
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31312654
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATCAGATCTCGTA3753191.1986176578963892Illumina Paired End Sequencing Primer 2 (100% over 36bp)
CTTTCCAGAATGGCGCAAATTCGGCATGTCCGGGGTCACAGTTTTTAAGT530850.16953210034511926No Hit
GACCCCGAAAATAATTTTTAACCATTTTCAAAAAAAAGTTTTTTTTTTTT486470.1553589165581429No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)