FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001220881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001220881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30997823
Sequences flagged as poor quality0
Sequence length44-93
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTCACACCGTCCACGGGCTGGGCCTCGATCAGAAGGACTTGGGCCCCC405160.13070595312451458No Hit
CTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTT346460.11176913940053146No Hit
GTCCTGAGAGATGGGCGAGCGCCGTTCCGAAGGGACGGGCGATGGCCTCC343380.11077552123579776No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA335500.10823340722992063No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)