FastQCFastQC Report
Thu 9 May 2024
EGAF00001220882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001220882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30957203
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length2-93
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTCACACCGTCCACGGGCTGGGCCTCGATCAGAAGGACTTGGGCCCCC453060.1463504309481706No Hit
GTCCTGAGAGATGGGCGAGCGCCGTTCCGAAGGGACGGGCGATGGCCTCC354920.11464860052117759No Hit
CTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTT350620.11325958614542793No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA339370.10962553690654804No Hit
CCTATACCCAGGTCGGACGACCGATTTGCACGTCAGGACCGCTACGGACC321990.1040113346157274No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)