FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001221157

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001221157
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4697736
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT132850.28279579780558123No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT130490.27777210128453367No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT89200.18987869901586635No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)