FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001221329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001221329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4735408
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT201240.4249686616232435No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT147530.31154654466943504No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT102070.21554636897179713No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)