FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001221403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001221403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5552838
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT188460.33939401797783403No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT148000.26653037599872353No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT99010.17830521978130823No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)