FastQCFastQC Report
Wed 14 Sep 2022
EGAF00001225742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001225742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70820790
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCCTACTACCAGACAACCTTAGCCAAACCATTTAC1363120.19247455443521597No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA927840.1310123764504745No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG819610.11573014082446693No Hit
CAAAAACATCACCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAG797780.11264771262788793No Hit
CTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACACAG794950.11224811245398421No Hit
CTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATAGAAGAACT753030.10632894662711331No Hit
CTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAA746150.1053574804799551No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC722020.10195028889115752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)