FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001227673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001227673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3695900
Sequences flagged as poor quality0
Sequence length100
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT98930.26767499120647203No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT93310.25246895208203685No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT56900.1539543818826267No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)