FastQCFastQC Report
Sat 4 May 2024
EGAF00001271117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001271117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23224549
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length90
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA896880.38617757442781775No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT301900.12999176001221813No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)