FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001272175

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001272175
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences160
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGT21.25No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT21.25No Hit
CTGGTCCTCGGAACTGGACCCGAACGCGCTGGCCGCGGGCGTGACCCGCG10.625No Hit
CTACGACTACCAGGACTACCTGCCGAATGTCGGCTACTACCGCGAAGTGC10.625No Hit
CCTATAGACAGCGATGTGAGCACTCTCATCTGCGGATCAGTCTATCCTCG10.625No Hit
CGTAATGGTAGAACATAGATTTCGTCTCGGATCTGCTGTTCTCCAAAGCC10.625No Hit
GCTTCTCTGATGATCACGGCTCTGCGTCACGCAAACACTGGTAAGCTGTG10.625No Hit
CGATCCCACCAAGCATTTTAGATCCCCTCCTTCAAGCCTTTTCAGAACCT10.625No Hit
GTATAAACCAATGAGAGAGCCTCACTTAGTTACAGTTTTATGGATAATTG10.625No Hit
TTGGTATAGTTGGGATTTTAATATCATTAATAGCATGATGGTGATTGTTT10.625No Hit
GTTTGGAGGAAACACCCTCATAGATGAAAACCCCCCCGAGACAGCAGCAC10.625No Hit
GTATTTAACCTGGGTTGCTCTGTGGCAGGTGAGGGCGCAGGAGGCCCCTG10.625No Hit
GTATCAACGCAGAGTACATGGGGGGAATTCTGGACATTAATTAGGGCTGA10.625No Hit
GTGGGAAATCATATCAGAACCCACATTCTTGTGACCAGGTAATACGTCCC10.625No Hit
CTCCCAAGGATCAGGGCGTGAATGTCATTTGTACCTTCTTAGGTGTTCAC10.625No Hit
TTCCCAAACACTGAACGAATTGTTAACCTCTGAGCTTAATTTTCAGGCTT10.625No Hit
GCCTGGTAGGAAAGAAATGGTCAAGACACTGAAATAGTCATTTCACAAAC10.625No Hit
CCCTTACTGTGTGCGTGCAAAAGATCTGGCTGAGAAATTGAGCAATGAAC10.625No Hit
CTGTGGGACTGGCGTTGTGCGGGCAGACGTTGGTGGTGCGGGGCGGCAGC10.625No Hit
GAATTATAGCATATATTTCTGATTAAGGTTTTCAGTTAGTTGTATTTGGT10.625No Hit
CTTCAGTACATTTCAGGTTTCTCCACAGAGCATCCAGGCCAGCCCCTGAG10.625No Hit
CTTACCCTGGAGAAGTGAAAGGCAAAGGCATCACAATGCTGGAAGAAATC10.625No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAATTATTTATTTTTCTTTCTTTCTAA10.625No Hit
TCTCCGAGCCCACGAGACGTAGAGGAAGCTCGTATGCCGTCTTCTGCTTG10.625Illumina PCR Primer Index 8 (96% over 26bp)
GTATCAACGCAGAGTACATGGGGTTATTGCAGCTGCTGCGGTGCTCAGTG10.625No Hit
CACCCAGACTGAAGTGCAATGGCGCGATCTTGGCTCACTGCAACCTCTGC10.625No Hit
GAGTACATGGGAGGATTTAAAAACTGGAACGGTGAAGGTGACAGCAGTCG10.625No Hit
AATTAATATTGTGCAAGTGTAAAACACTTCTGTTATAAAAGCAGTGTTTG10.625No Hit
AACCAATGCTGAGACATTTGTAATGAAATACTAATTTTAAAAATCCATGA10.625No Hit
GCGGACTTCTCCTTGCTCACGCTCGGTGAATTCTCTGCAGACCTTGGCAG10.625No Hit
CTGTAGCTGTCTGCTAAATTTCACAGAGCTGTTTGCTTCTCTATGGCAGT10.625No Hit
GTATCAACCAGAGGGAGTGAATCCAGATTAGTTTCCCTCAGGTTCAGGGA10.625No Hit
GTGTTGGATATTGAGGCTGCTTCGTGTCGGCACGAAGCAGCCTCAATATC10.625No Hit
CTATATCACCTTTCTGGAAATCCTGCCCCAGGAGCTGGCCAGTTCTGAGC10.625No Hit
ATATTAAAATACAGTGATAGTTTGCATTTCTTCTATAGAATGAACATAGA10.625No Hit
TCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTGCTTGAA10.625TruSeq Adapter, Index 1 (96% over 28bp)
GCCATCCACGTTGTTAAACAGAATAAAATGGAAATTCACCTTGTCATCTA10.625No Hit
CAGCAAGCACAACTAGCAGCTGCTGAGAAATTCAAAGTTCAAGGTGAAGC10.625No Hit
CTATGAAGCAGGTATCTATTTTCCCTCAAATTTCAAGTTGATTTACTAAA10.625No Hit
GCCACGAGATGTGTTTTATTTTCATTATTCATACAAATAATTTTCTATAA10.625No Hit
AAGAAGGAGCGATTCAGAGGTGGATTTCCTGAAGACCAACAACATTTTTG10.625No Hit
GTATCAACGCAGAGTACATGGGGATGACATCTCTGTCAGAGTATGTTTCT10.625No Hit
GTAATAAAACTGTAGGCAGTTGTATGTGTAGATTTCTATGTAATTTGTTT10.625No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTCTTAAGG10.625No Hit
CTATTATACATGCAACACTGAACTGGGGAACATGGCTTGGGGCCTCCAGG10.625No Hit
AAGTGAAAGAAGCCAGACACAAAAGGCCATATATCATATGATTCCATTTG10.625No Hit
TCAGGAAGCTAAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGGATG10.625No Hit
TTCCTTCTCAGAATCTTGACTAAAAAAACAGAAAGGAAAGGTGAGAAAAA10.625No Hit
CTTTAGAACAGTTTTCAATATCCAAGGCTGTTTGCTTATTTCACTGGAAT10.625No Hit
TCTCCGAGCCCAGAGACCGAGGCTGATCTCGTATGCCGTCTTCTGCTTGA10.625Illumina PCR Primer Index 9 (96% over 27bp)
TCCTTTGGCTTTCTGGATCAAGAAGGATGTCTGACTCTGAGTTTTAAATC10.625No Hit
GGGATTATAGGCATGAGCCACCGCGCCCAGCCTTGATAGCACTGTTTCAA10.625No Hit
GGTGCCACACGACTACAACCCTCGTAATAGGGCTGCGTGCGTCCTAAATA10.625No Hit
ATGTTGGCCGGGCTGGTCTCGAACGTCTGACCTCGTGATCGCCTGCCTCG10.625No Hit
CATCGTGAAGACCTAGCGATTCATTGATAACTACGGTCTATATAATAACC10.625No Hit
TTACTACTGTGAGCCACCAGGCCCGATCCCACCAAGCATTTTAGATCCCC10.625No Hit
GCAGATGGGGCTCTGAGCTCAGGCAGAGACCGTGAGGAGGGGAGGATGGA10.625No Hit
CTCTGGGTCCATTCCCGATACATTAACAAAATGCCTGAAACACAGTGGGG10.625No Hit
GAGATTTCATTCTGGATTATAGATACATGTTGAGCCTTGTCAAACATACA10.625No Hit
ATGTTTGCAGCATACTTTAGGTGGGCCTTGGCTTCCTTCCGCAGTCAAAA10.625No Hit
CTGTACTACTAGAAGGGAGCTTTTGGTGGTAGATCCCCTGGTGTCTCCAA10.625No Hit
CAATAAAATAATATCCCTGCATCCATTATTTTCTAAAACTTTAACTGCTT10.625No Hit
GCATGGAGTTGCATGGCGGTGACAGAGCCAGGCGCAGGTGCAGGCGCAGG10.625No Hit
CCCTCAGGAAGCTAAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGG10.625No Hit
GCGTCTGTGTGACCAGTTCAGTAGAATTATAGATGTGATTTAGTTTTTAT10.625No Hit
TTGAACTCCTGACCTCAGGTGATCCACCCGCCTTGGCCTCCCAAAGTGCT10.625No Hit
ATTCTAAGCTGAGTCTGAGCTATTTCTGAGCCATTATGTTTCAAAGACAG10.625No Hit
GGGTGGAGGAGGCAAAAGGAAGGCAAGGGACATCCTAGTAATCGTACTAA10.625No Hit
AGGAAATCCTCCAGGATCTTAGGAAATTTCACTCCGCTTCTCCTGCTCAA10.625No Hit
GGAAATATAGTATGTATATAATAATAATTCTGAACCAAGAACCCAAAGGC10.625No Hit
GGAAAGGAGCTTAAGCCAGGAGTCAATGGAGCCCTGGCTATCTCAGGTAA10.625No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC10.625No Hit
GATTTCCTGACAAAGGCCCAGGCCTCATCCTCTGTGGCAAACTTCTTAAA10.625No Hit
GTATGATGGATATCTAAAGCAGTTGTAGGTTCATCAAGTAGCCAAAATGC10.625No Hit
ATCTTGGATATGATATGGCGTACTACACATGCTAGCCGCTGGGGAGATTA10.625No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.625No Hit
GCTCCTGTGGGCTGCGGCCTGCGCGCAGCAGGAGCAGGACTTCTACGACT10.625No Hit
ATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGAGAGCCTCACT10.625No Hit
GAGTTAATCTGGCAGACCAAAAAGTTTAAGGAGCCTCTGGTAAAACTATA10.625No Hit
TCACAGTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTA10.625No Hit
TTCCTGGTTGTCGTAATCAGCCGTAGCATGAGATAGCCGATGACCGCCGA10.625No Hit
GTGTTGGTGAAGCCTCTCCTCGCGAGCAGCGCGCACCCCTCCAGAGCACC10.625No Hit
GTACACAGATACGCGCTCAGCATAGCAGATGCACGTTGAGTCCACGGGAT10.625No Hit
GTATCAGGTAGTTTGTAGCTATAACAAGAAGTGATATCTCTAAAATATGC10.625No Hit
TGGGGAACGGACCCTGGGAGTCGGCCATCATGCTGGCCCCGGAGGCCGTT10.625No Hit
GAGTACATGGGTAGAGTGGTCACAAGCCACACGTGACAGTTGGGCACTTG10.625No Hit
TCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTGCTTG10.625TruSeq Adapter, Index 1 (96% over 28bp)
GAAAAGCTATAACCCGCAGACCCGAGCGAAAGCGGCGGTCCTTACAAGTC10.625No Hit
CCAGGCAGGTGCGCTTTGGCCTGGGCTTGTACTTATAGTCAGGGTACTTC10.625No Hit
CCCTCCACTACGCCCGGCAATTTTTTTTGTATTTTTAGTAGAGACGGGGT10.625No Hit
GTTTAGATTCATCTGAGTGTCCTTTTCCCAAGAGCCTGGTACATGCTGTA10.625No Hit
CGTCAGGCGGTTGAACCATGTTGATTTCCCTGCGTTTGTATAGCCGACAA10.625No Hit
GAGCTGTTCCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAA10.625No Hit
CCTGTATCCCAATTCTCAGAGGTCCCGCCGTACGCTGAGGACCACCTGAA10.625No Hit
GCCTCCCGAGTAGCTAAGACCACAGGCGTGCCACCACCACGCACGGCTAA10.625No Hit
TCGCATTGGATGACGATGCCTAGTACTGTGCGCCAATTAGGTCGTCATTG10.625No Hit
TCTCCGAGCCCACGAGACTCCTGAGCACCTCGTATGCCGTCTTCTGCTTG10.625RNA PCR Primer, Index 26 (96% over 29bp)
TAATCAAATTGTATAAATATCACCTATTATACAGATTTTTCTTACAGCCT10.625No Hit
TCGGCACGAAGTAGCCTCAATATCTAACACGAGGATGTTCCTGTTGATAC10.625No Hit
ATATAAATAATTATGCAATTAAGTATATTCTTTCAAATGTATGGCACCTA10.625No Hit
ATGGTGGAGAGGGAGAAGTTATCATTGTGGAGCTCAGATGGGGTCCGGAA10.625No Hit
CTGTAGACCTGGTCTTTTTCCCCCCAGTTTTTTCTTTTTTACATTCTGGG10.625No Hit
GTCCCCCCTGCGGGTGAAGAACTTCGGGATCTGGCTGCGCTATGACTCCC10.625No Hit
CTGAAGGGCCCCTTGCAAAGTAATAGGGCTTCTGCCTAAGCCTCTCCCTC10.625No Hit
GAGTACATGGGGGCCCGGAGGACAGAGCGGCCCGGTCGCCGGCATGGTTT10.625No Hit
CATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGTCTTCTGCT10.625TruSeq Adapter, Index 3 (96% over 26bp)
GTCTTGCTATGCCACCCAGGCTGCAGTGCAGTGGCACGATCTCAGCTCGC10.625No Hit
GTCCGGCTCTGGACACAAACCAGTGAAGGCAGGCCGGAGAACCTGAAGCT10.625No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGAATT10.625No Hit
GTTAATAATTCTGGCAATTCGTCTCCACACTAGAAGTCGACGAACAACGA10.625No Hit
GTATCAACGCAGAGTACATGGGGGGACCCTGGGAGTCGGCCATCATGCTG10.625No Hit
TTGGTCAGCAGTTGACAGTGGGGACACTGTGCCTCCAGGACTCAAACACC10.625No Hit
CGGCCACTCAGTGGTTCGTCACGCGCAGCCCCGGGTTCGTCCCCTATAAG10.625No Hit
CGTTATAACGGCCACTCAGTGGTTCGTCACGCGCAGCCCCGGGTTCGTCC10.625No Hit
AGACGGGGTTTCACTATGTTGGCCAGACTGGTCTCAATCTCCTGACCTCA10.625No Hit
CACTAGAAGTCGACGAACAACGAAGAGCGACGATGCCCGTTTCAGGTGGT10.625No Hit
CCGTGGGATGGCGCGATCCGATGCGGCCGCCGTTCGCGTAGAGCGTGGAC10.625No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGCTAGA10.625No Hit
CCCAGATACTCAGGAGGCTGAGGCATGAGAATCTCTTGAACCCGGGAGGC10.625No Hit
GAGCCACCGCGCCTAGCCTGCTTAGAGTTTTTTATGTAATTATTTTGTGA10.625No Hit
ACTAGGTAGTGCGTGTGTGTCTGTGTGTGTGCGCGTGCGTGTTCATCTAC10.625No Hit
GTACCTGGGATGGACAGCTGTGATGAGTTGATACCAGAGTATCTCAATTT10.625No Hit
GTAGAACCAATTGCACTATCTCTTTGAGGACTTGTCCAATTTGCTGGCAG10.625No Hit
CGTTAACAGTTCTTGGCGCAAATAGCGCTGAATCGCTTCTTTAAAGGCTG10.625No Hit
ATGCCATTTGCTGTGTTAATTTTCCCCAATATAGTTTTTGTTGTTACATT10.625No Hit
CTTGTACATGAATGCTCATGGCCAAAAACTAGAACCATGGAGTACCATTC10.625No Hit
TGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGATCCAAT10.625No Hit
TTTTCAATGTTTAAAACAGAATAAGCTTCCCTGTAAAAGCAGCACCTTTG10.625No Hit
ATGTATGCACAAGCACATGAATGAACACACATACACACACTCTCTTCTAC10.625No Hit
TTTCTACAGCTAGAACAGAGATTCTAAAAGAGGGCCTGCATCCTTCTCTT10.625No Hit
GTGACAGCGAGAATAACTTACGTCAACCTTCAATGCCAGTTATACAAGGA10.625No Hit
ACCGCCGGGCATCCTCCTCGGCTCGGTTCTTGCCATACTTGTATTGATTG10.625No Hit
CCTAAATACACTCGCTGTTGAGATACTAAAATTATCTGTGGATTGCCGGC10.625No Hit
NTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTATTTATTTT10.625No Hit
CTCTTTATTGTCAGCGAGAGCAGCAGGCCAAACGGGCACTGAGGCTCCAC10.625No Hit
ACCTTATTTTTACAAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.625No Hit
GTGTTAGCCAAGATGGTCTCGATCTCCTGACCAACACGGTGAAACCCCGT10.625No Hit
CACTGCCCCCTTTCAGCCTTTTGGGTCCTGTATCCCAATTCTCAGAGGTC10.625No Hit
GGAGGAGAGAGGAAGGAGTAAGAGGGCCCCCTAGGGAAAGATCCAAGCCC10.625No Hit
CTCCCGGAGCGGCACCCACAACATGTACCGGGAATACCGGGACCTGACCA10.625No Hit
GAGTACATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTT10.625No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGAAAAAAAAAAGA10.625No Hit
ACTTTAGGTGGGCCTTGGCTTCCTTCCGCAGTCAAAACCGCGCAATTATC10.625No Hit
GTCGCCAAGTCAGCTGAAGTCATTGGCAACAGCAATTGAAGTGAAGATGA10.625No Hit
GGTTTTGCCACAGAAAGAGCAAGTGTACTTGGCGTGCTGGCTGATTTCAA10.625No Hit
CACTTAATCCTCACAACGGTTCCCTAAGGCAGGCATTAGCCACATTTTAA10.625No Hit
CTGTCGCCCAGGCTGCAGTGCAATGGCACGAGCACAGCTCACTTGCAGCC10.625No Hit
ATCTTTGGGTCCTGGGGCACTTGGAACCTGGGAGTTGTTGGGCAGATCCC10.625No Hit
GAGTACATGGGAGACGGTATCAACAGGAACATCCTCGTGTTAGATATTGA10.625No Hit
CTATCGGAGTTGCCGCGCTGGTGCCACACGACTACAACCCTCGTAATAGG10.625No Hit
CCGTTGTCTTCTGTTTTACTTGTCTTAAAAGCCAAATGCCCCATAATGAC10.625No Hit
ATTGTCTACTGTGGGCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAA10.625No Hit
GGTGGGGCGCTTGGAGCCTGCGGCTGCACCCAGGTCCGTCTTAGAGGGGA10.625No Hit
TCCTAGGGGTGTAGTCCTGTGCCCGGAGACCCAGCACTGGGCTTTGACCC10.625No Hit
GGAGAAAAAGCTGAACCAGGCCCTTTTGGATCTTCATGCCCTGGGTTCTG10.625No Hit
AAATGCTGGCCCCGTGGCACCCAGACAGGAGCCTGCTGGCTAGCATGCAA10.625No Hit
GGGCAGATCACCCGAGGTCAAGAATTCAAGACCAGCCCGACCAACATGGC10.625No Hit
GTACATGGGGGGAATTCGAGCTCTTGATGATGATACTTAACCAAACCTAC10.625No Hit

[OK]Adapter Content

Adapter graph