FastQCFastQC Report
Thu 5 Jan 2023
EGAF00001272407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001272407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75461440
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1334380.17682938464996162No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC1101930.1460255727958544No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT862390.11428220823774368No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)