FastQCFastQC Report
Thu 9 Feb 2023
EGAF00001272417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001272417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101525272
Sequences flagged as poor quality0
Sequence length76
%GC48

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1719130.1693302530625084No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1493160.147072740666974No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC1246700.12279701156575085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)