FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001272460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001272460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5307938
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATTCATTTCAGCATTTATTGGTTGTATGAGAGTAGATAGAAAAAGACAA1424812.6843003818055147No Hit
AATTCGAGCTCAACAATTTTAGTGAATTTATCATCGTCCACTTGAATCTG1322582.491702050777534No Hit
AATTCATTAGTAATAGTTACGCTGCGGCCTTTTACACATGACCTTCGTGA823861.5521281522127803No Hit
AATTCAAGGGGGTTTGCTCTATTTAATTAGGAATAAGGTCGATTACTGAT775371.4607744099497773No Hit
AATTCACTTCCGGCGTGAATGTTACTGAATCCCCGATCATCTATCGCGAC636491.1991285504841993No Hit
AATTCTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTACGCATAC578421.0897263683185447No Hit
AATTCACAACCTGACCCAGCAAAAGGTACACAATACTTTTATATTGGACT530610.9996537261738927No Hit
AATTCTCTGACGAATAATCTTTTCTTTTTTCTTTTGTAATAGTGTCTTTT510900.9625206624493353No Hit
AATTCTAAGCGGAGATCGCCTAGTGATTTTAAACTATTGCTGGCAGCATT510890.9625018227417126No Hit
AATTCGCTTGCTGAGGTTTGCACCGGTGTGGCTCCGGAAGTTAACGCTAA498220.9386319131836129No Hit
AATTCAAACAGGGTTCTGGCGTCGTTCTCGTACTGTTTTCCCCAGGCCAG480430.9051160733226349No Hit
AATTCGAATAAACCAATGGACAGAATCACCGATTCTCAACTTAGCGAGAT362240.6824495689286498No Hit
GGGAGTATGAAAAGTATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGG324930.6121586197879477No Hit
AATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAAATCGAGATAAC291860.5498557066793169No Hit
AATTCAGGACAGACAGTGGCTACGGCTCAGTTTGGGTTGTGCTGTTGCTG269700.508106914587171No Hit
AATTCTCTGACGAATAATCCTTTCTTTTTTCTTTTGTAATAGTGTCTTTT212570.40047566493806064No Hit
AATTCAGATCTCCCTCAAACTGGGGGATTGCTATCCCTCAAAACAGGGGG209590.3948614320664635No Hit
AATTCAGATCTCCCTCAAATTGGGGGATTGCTATCCCTCAAAACAGGGGG159280.3000788630161091No Hit
AATTCACCGGAAGCAGAACCGGATCACCAAATGCGTACAGGCGTCATCGC149030.2807681627027294No Hit
AATTCTCTAGACCGGCGCGTGAGTTCACCATGATTAGTCAGCACCGCTGA128700.24246703710555775No Hit
AATTCATTACGCCAGTTGTACGGACACGAACTCATCAGGGTCAGCCAGCA125320.23609921592904815No Hit
AATTCGAGCTCGGTACCCCTCGGTACCACCATCGCAGGCAGAGAGGTCTG119680.22547362082978362No Hit
AATTCCGGCGAATCCTCTGACCAGCCAGAAAACGACCTTTCTGTGGTGAA117200.2208013733393269No Hit
GGGGTGCTCGCGATATGCTCTACCCGGAGCGTATTTATCAGGAATTTGAA90040.16963272743577637No Hit
AATTCAATCCAGTCTGTGTTTGTCAGGTCGAGTTTTGGTTTGCTGGCTGT80750.1521306390541864No Hit
GGGTCACGTTCGATAATCGACATACCTTCGTGGAACACCGCAGCGCGAAT75410.14207023518360615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)