FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001272494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001272494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5238914
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATTCATTTCAGCATTTATTGGTTGTATGAGAGTAGATAGAAAAAGACAA1393362.6596351839331587No Hit
AATTCGAGCTCAACAATTTTAGTGAATTTATCATCGTCCACTTGAATCTG1313322.5068554284342137No Hit
AATTCATTAGTAATAGTTACGCTGCGGCCTTTTACACATGACCTTCGTGA818451.5622512604711587No Hit
AATTCAAGGGGGTTTGCTCTATTTAATTAGGAATAAGGTCGATTACTGAT773811.4770427611524068No Hit
AATTCACTTCCGGCGTGAATGTTACTGAATCCCCGATCATCTATCGCGAC616841.177419594977127No Hit
AATTCTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTACGCATAC569601.087248235034971No Hit
AATTCACAACCTGACCCAGCAAAAGGTACACAATACTTTTATATTGGACT521250.9949581153651309No Hit
AATTCTCTGACGAATAATCTTTTCTTTTTTCTTTTGTAATAGTGTCTTTT503120.9603517064796254No Hit
AATTCTAAGCGGAGATCGCCTAGTGATTTTAAACTATTGCTGGCAGCATT501320.9569158798941917No Hit
AATTCGCTTGCTGAGGTTTGCACCGGTGTGGCTCCGGAAGTTAACGCTAA490800.9368353822948803No Hit
AATTCAAACAGGGTTCTGGCGTCGTTCTCGTACTGTTTTCCCCAGGCCAG468130.8935630552438921No Hit
AATTCGAATAAACCAATGGACAGAATCACCGATTCTCAACTTAGCGAGAT353860.6754453308452858No Hit
GGGAGTATGAAAAGTATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGG312910.5972802760266728No Hit
AATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAAATCGAGATAAC289270.5521564202046455No Hit
AATTCAGGACAGACAGTGGCTACGGCTCAGTTTGGGTTGTGCTGTTGCTG265550.5068798609788211No Hit
AATTCTCTGACGAATAATCCTTTCTTTTTTCTTTTGTAATAGTGTCTTTT211440.40359509623559386No Hit
AATTCAGATCTCCCTCAAACTGGGGGATTGCTATCCCTCAAAACAGGGGG206790.3947192108898905No Hit
AATTCAGATCTCCCTCAAATTGGGGGATTGCTATCCCTCAAAACAGGGGG155890.2975616702240197No Hit
AATTCACCGGAAGCAGAACCGGATCACCAAATGCGTACAGGCGTCATCGC147340.28124149394321035No Hit
AATTCTCTAGACCGGCGCGTGAGTTCACCATGATTAGTCAGCACCGCTGA128180.2446690287338177No Hit
AATTCATTACGCCAGTTGTACGGACACGAACTCATCAGGGTCAGCCAGCA121370.23167015148559414No Hit
AATTCGAGCTCGGTACCCCTCGGTACCACCATCGCAGGCAGAGAGGTCTG115090.21968293428752597No Hit
AATTCCGGCGAATCCTCTGACCAGCCAGAAAACGACCTTTCTGTGGTGAA114960.2194347912563558No Hit
GGGGTGCTCGCGATATGCTCTACCCGGAGCGTATTTATCAGGAATTTGAA88720.16934807481092456No Hit
AATTCAATCCAGTCTGTGTTTGTCAGGTCGAGTTTTGGTTTGCTGGCTGT80310.15329512948676005No Hit
GGGTCACGTTCGATAATCGACATACCTTCGTGGAACACCGCAGCGCGAAT76200.14544999211668677No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)