FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001274369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001274369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13912664
Sequences flagged as poor quality0
Sequence length53
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGCCGT2042401.468015040110219TruSeq Adapter, Index 10 (100% over 53bp)
ACTTCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAAT357580.2570176351559989No Hit
TATTCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCA232300.16697017911163528No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)