FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001275136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001275136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5282106
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATTCATTTCAGCATTTATTGGTTGTATGAGAGTAGATAGAAAAAGACAA1368012.5898950153594043No Hit
AATTCGAGCTCAACAATTTTAGTGAATTTATCATCGTCCACTTGAATCTG1281722.4265321445650656No Hit
AATTCATTAGTAATAGTTACGCTGCGGCCTTTTACACATGACCTTCGTGA810161.5337821694604388No Hit
AATTCAAGGGGGTTTGCTCTATTTAATTAGGAATAAGGTCGATTACTGAT766571.451258267062418No Hit
AATTCACTTCCGGCGTGAATGTTACTGAATCCCCGATCATCTATCGCGAC629881.1924789089806225No Hit
AATTCTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTACGCATAC568521.0763131220766868No Hit
AATTCACAACCTGACCCAGCAAAAGGTACACAATACTTTTATATTGGACT520150.9847397988605302No Hit
AATTCTAAGCGGAGATCGCCTAGTGATTTTAAACTATTGCTGGCAGCATT499950.9464974765746844No Hit
AATTCTCTGACGAATAATCTTTTCTTTTTTCTTTTGTAATAGTGTCTTTT493100.9335291643143852No Hit
AATTCGCTTGCTGAGGTTTGCACCGGTGTGGCTCCGGAAGTTAACGCTAA492730.9328286861339019No Hit
AATTCAAACAGGGTTCTGGCGTCGTTCTCGTACTGTTTTCCCCAGGCCAG475240.8997168932240285No Hit
AATTCGAATAAACCAATGGACAGAATCACCGATTCTCAACTTAGCGAGAT346290.6555907814042353No Hit
GGGAGTATGAAAAGTATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGG311470.5896701050679407No Hit
AATATAACCTTTCATTCCCAGCGGTCGGTCGATAAAAAAATCGAGATAAC289010.5471491863283319No Hit
AATTCAGGACAGACAGTGGCTACGGCTCAGTTTGGGTTGTGCTGTTGCTG262560.4970744623451328No Hit
AATTCTCTGACGAATAATCCTTTCTTTTTTCTTTTGTAATAGTGTCTTTT208500.39472892062370574No Hit
AATTCAGATCTCCCTCAAACTGGGGGATTGCTATCCCTCAAAACAGGGGG205490.3890304359662604No Hit
AATTCAGATCTCCCTCAAATTGGGGGATTGCTATCCCTCAAAACAGGGGG157410.298006136188861No Hit
AATTCACCGGAAGCAGAACCGGATCACCAAATGCGTACAGGCGTCATCGC149360.28276600280267No Hit
AATTCTCTAGACCGGCGCGTGAGTTCACCATGATTAGTCAGCACCGCTGA126830.24011256116405086No Hit
AATTCATTACGCCAGTTGTACGGACACGAACTCATCAGGGTCAGCCAGCA123000.23286166540391276No Hit
AATTCGAGCTCGGTACCCCTCGGTACCACCATCGCAGGCAGAGAGGTCTG114600.21695891752266994No Hit
AATTCCGGCGAATCCTCTGACCAGCCAGAAAACGACCTTTCTGTGGTGAA113700.21525505167825104No Hit
GGGGTGCTCGCGATATGCTCTACCCGGAGCGTATTTATCAGGAATTTGAA89180.16883417333919462No Hit
AATTCAATCCAGTCTGTGTTTGTCAGGTCGAGTTTTGGTTTGCTGGCTGT80780.1529314254579518No Hit
GGGTCACGTTCGATAATCGACATACCTTCGTGGAACACCGCAGCGCGAAT77520.14675964473261233No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)