FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001276393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001276393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19163518
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC322863316.847809467969295TruSeq Adapter, Index 4 (100% over 50bp)
GAGCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC214720.11204623284722566TruSeq Adapter, Index 4 (98% over 50bp)
GATCGGAAGACACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGCC199480.10409362205832978TruSeq Adapter, Index 4 (100% over 40bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)