FastQCFastQC Report
Sun 14 May 2023
EGAF00001281628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001281628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44669228
Sequences flagged as poor quality0
Sequence length49-76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA15914083.5626494373262956No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC5356621.1991745189775833TruSeq Adapter, Index 6 (100% over 50bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4578081.0248845133388023No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2689960.6021953188893258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)