FastQCFastQC Report
Sun 14 May 2023
EGAF00001281629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001281629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44669228
Sequences flagged as poor quality0
Sequence length49-76
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT19782274.428612466729893No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3048020.6823534089284015No Hit
ATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA990870.22182384705641206No Hit
ATGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA523430.1171791014610774No Hit
ATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGG456550.10220682569217449No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)