FastQCFastQC Report
Sat 13 May 2023
EGAF00001281645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001281645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36234227
Sequences flagged as poor quality0
Sequence length49-76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9230782.5475305434279027No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1092370.3014746250830741No Hit
ATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGG714730.19725272461311236No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN714070.1970705763917635No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)