FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001281651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001281651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32324425
Sequences flagged as poor quality0
Sequence length49-76
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11948973.6965761958642727No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1880200.5816654124551326No Hit
ATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAA489600.15146441119988988No Hit
ATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGG468380.1448997159268881No Hit
ATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGG349000.10796789115351627No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)